usefragsph not on There are 33 ligand heavy atoms Ligand center of coords (x y z): 22.6004242424242 18.5803939393939 35.5991515151515 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 908 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 558 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 555 Number of spheres polar: 138, nonpolar: 288, out of current total: 555 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 12.70558 32.36255 8.68256 27.77549 25.76411 45.55393 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 319 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 285 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 260 Spheres center of coords (x y z): 25.0176786538462 19.2972414615385 36.2620692692308 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 4.20423773305474 Final number of output spheres is: 60 Number of polar spheres: 21 Number of nonpolar spheres: 32 Number of spheres that are near neither polar nor nonpolar receptor atoms: 7 Final number of spheres that are from crystallographic ligand: 33