usefragsph not on There are 32 ligand heavy atoms Ligand center of coords (x y z): 33.0956875 42.34240625 7.70040625 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1152 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 704 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 700 Number of spheres polar: 168, nonpolar: 383, out of current total: 700 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 23.40967 43.04247 32.36048 51.62787 -2.21898 16.76814 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 374 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 318 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 303 Spheres center of coords (x y z): 35.0951694059406 42.0094803960396 6.39272171617162 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 4.70482461059281 Final number of output spheres is: 60 Number of polar spheres: 17 Number of nonpolar spheres: 36 Number of spheres that are near neither polar nor nonpolar receptor atoms: 7 Final number of spheres that are from crystallographic ligand: 32