usefragsph not on There are 33 ligand heavy atoms Ligand center of coords (x y z): 19.7345454545455 62.6818787878788 25.1801818181818 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1607 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 846 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 845 Number of spheres polar: 215, nonpolar: 397, out of current total: 845 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 9.83962 29.65810 52.74700 72.62589 15.28585 35.12791 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 491 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 435 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 413 Spheres center of coords (x y z): 18.8567086682809 62.9044462469735 27.5807934624698 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.37109224608947 Final number of output spheres is: 60 Number of polar spheres: 20 Number of nonpolar spheres: 34 Number of spheres that are near neither polar nor nonpolar receptor atoms: 6 Final number of spheres that are from crystallographic ligand: 33