usefragsph not on There are 33 ligand heavy atoms Ligand center of coords (x y z): 19.7381212121212 62.3881212121212 24.8936060606061 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1737 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 927 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 927 Number of spheres polar: 211, nonpolar: 454, out of current total: 927 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 9.85613 29.63807 52.39704 72.33857 15.01252 34.76538 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 532 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 459 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 439 Spheres center of coords (x y z): 19.2441419817768 62.8717758542141 27.3148689977221 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.64361294436796 Final number of output spheres is: 60 Number of polar spheres: 23 Number of nonpolar spheres: 32 Number of spheres that are near neither polar nor nonpolar receptor atoms: 5 Final number of spheres that are from crystallographic ligand: 33