usefragsph not on There are 33 ligand heavy atoms Ligand center of coords (x y z): 19.6590303030303 62.6956363636364 24.8895454545455 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1663 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 891 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 891 Number of spheres polar: 210, nonpolar: 424, out of current total: 891 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 9.71572 29.46253 52.71382 72.68665 15.17811 34.81120 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 505 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 445 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 425 Spheres center of coords (x y z): 18.9695442588235 63.3015426352941 27.1601643529411 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.6347114581402 Final number of output spheres is: 60 Number of polar spheres: 15 Number of nonpolar spheres: 34 Number of spheres that are near neither polar nor nonpolar receptor atoms: 11 Final number of spheres that are from crystallographic ligand: 33