usefragsph not on There are 33 ligand heavy atoms Ligand center of coords (x y z): 19.7351212121212 62.6027878787879 25.0012121212121 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1664 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 898 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 898 Number of spheres polar: 198, nonpolar: 453, out of current total: 898 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 9.75408 29.71265 52.62096 72.53435 15.28566 34.93199 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 521 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 453 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 432 Spheres center of coords (x y z): 19.2769272685185 63.1583677546296 27.3089528703704 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.41102855717812 Final number of output spheres is: 60 Number of polar spheres: 17 Number of nonpolar spheres: 35 Number of spheres that are near neither polar nor nonpolar receptor atoms: 8 Final number of spheres that are from crystallographic ligand: 33