usefragsph not on There are 32 ligand heavy atoms Ligand center of coords (x y z): 22.1299375 18.42328125 35.8024375 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1023 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 667 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 663 Number of spheres polar: 146, nonpolar: 352, out of current total: 663 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 13.30575 32.10649 8.64486 28.39680 25.90067 45.73346 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 373 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 335 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 323 Spheres center of coords (x y z): 25.2707488854489 19.0746760990712 35.9762868111455 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.33450979130679 Final number of output spheres is: 60 Number of polar spheres: 16 Number of nonpolar spheres: 38 Number of spheres that are near neither polar nor nonpolar receptor atoms: 6 Final number of spheres that are from crystallographic ligand: 32