usefragsph not on There are 31 ligand heavy atoms Ligand center of coords (x y z): 13.3756451612903 6.48654838709678 9.69593548387097 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1580 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 966 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 966 Number of spheres polar: 204, nonpolar: 619, out of current total: 966 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 3.54995 23.33271 -3.49624 15.77600 -0.30325 15.60798 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 503 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 430 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 407 Spheres center of coords (x y z): 15.6763323341523 5.63877407862408 6.68831140049141 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.70785912969722 Final number of output spheres is: 60 Number of polar spheres: 18 Number of nonpolar spheres: 41 Number of spheres that are near neither polar nor nonpolar receptor atoms: 1 Final number of spheres that are from crystallographic ligand: 31