usefragsph not on
There are 25 ligand heavy atoms
Ligand center of coords (x y z): 14.24264 5.83256 11.2656
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1461
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 758
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 757
Number of spheres polar: 135, nonpolar: 532, out of current total: 757
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 4.27688 24.19473 -4.11072 15.75085 1.26735 15.48545
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 393
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 344
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 321
Spheres center of coords (x y z): 15.788876728972 7.33567672897196 7.52794052959502
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 5.15591561070069
Final number of output spheres is: 60
Number of polar spheres: 9
Number of nonpolar spheres: 46
Number of spheres that are near neither polar nor nonpolar receptor atoms: 5
Final number of spheres that are from crystallographic ligand: 25