usefragsph not on There are 22 ligand heavy atoms Ligand center of coords (x y z): 14.0692272727273 6.29181818181818 11.5566818181818 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1807 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 1037 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 1037 Number of spheres polar: 248, nonpolar: 606, out of current total: 1037 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 4.15928 24.06579 -3.68365 16.15477 1.57085 21.22162 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 285 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 239 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 217 Spheres center of coords (x y z): 16.5327774654378 7.33479161290323 8.46523179723502 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.2727863627206 Final number of output spheres is: 45 Number of polar spheres: 16 Number of nonpolar spheres: 27 Number of spheres that are near neither polar nor nonpolar receptor atoms: 2 Final number of spheres that are from crystallographic ligand: 22