usefragsph not on There are 25 ligand heavy atoms Ligand center of coords (x y z): 30.97476 9.61336 10.53408 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1515 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 835 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 835 Number of spheres polar: 147, nonpolar: 540, out of current total: 835 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 21.01759 40.94408 -0.33213 18.96280 0.55148 16.22690 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 436 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 380 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 361 Spheres center of coords (x y z): 33.2201308587257 10.1803325207756 6.91522182825485 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.81778152400896 Final number of output spheres is: 60 Number of polar spheres: 16 Number of nonpolar spheres: 43 Number of spheres that are near neither polar nor nonpolar receptor atoms: 1 Final number of spheres that are from crystallographic ligand: 25