usefragsph not on There are 31 ligand heavy atoms Ligand center of coords (x y z): 14.3636451612903 1.25751612903226 9.28706451612903 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1746 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 1036 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 1036 Number of spheres polar: 209, nonpolar: 649, out of current total: 1036 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 5.00064 24.35099 -8.71281 11.16823 -0.69210 19.27619 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 546 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 486 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 475 Spheres center of coords (x y z): 15.7659048631579 1.30318637894737 6.96412475789473 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.1314648685552 Final number of output spheres is: 60 Number of polar spheres: 13 Number of nonpolar spheres: 46 Number of spheres that are near neither polar nor nonpolar receptor atoms: 1 Final number of spheres that are from crystallographic ligand: 31