usefragsph not on There are 32 ligand heavy atoms Ligand center of coords (x y z): 8.75203125 53.58353125 33.5504375 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1703 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 1026 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 1026 Number of spheres polar: 215, nonpolar: 633, out of current total: 1026 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -1.23644 18.65484 43.61200 63.58271 23.56242 42.41232 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 554 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 486 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 463 Spheres center of coords (x y z): 6.37495222462202 51.8726625269978 33.2650540388769 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.75346484250501 Final number of output spheres is: 60 Number of polar spheres: 18 Number of nonpolar spheres: 38 Number of spheres that are near neither polar nor nonpolar receptor atoms: 4 Final number of spheres that are from crystallographic ligand: 32