usefragsph not on There are 19 ligand heavy atoms Ligand center of coords (x y z): 30.5398421052632 -3.3748947368421 1.90131578947368 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1318 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 586 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 582 Number of spheres polar: 112, nonpolar: 281, out of current total: 582 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 22.95015 40.49260 -13.36055 4.96093 -7.97270 10.78101 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 225 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 182 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 168 Spheres center of coords (x y z): 35.0934919047619 -5.75477952380953 -0.741035535714286 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 7.22618602121055 Final number of output spheres is: 45 Number of polar spheres: 12 Number of nonpolar spheres: 29 Number of spheres that are near neither polar nor nonpolar receptor atoms: 4 Final number of spheres that are from crystallographic ligand: 19