usefragsph not on There are 20 ligand heavy atoms Ligand center of coords (x y z): 30.60785 -3.82875 1.95765 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1283 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 669 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 661 Number of spheres polar: 151, nonpolar: 317, out of current total: 661 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 22.83517 40.58001 -13.82871 4.70851 -7.93517 11.87029 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 235 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 194 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 190 Spheres center of coords (x y z): 34.6533424210526 -6.58736305263158 0.0966273157894737 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 7.19326347131943 Final number of output spheres is: 45 Number of polar spheres: 11 Number of nonpolar spheres: 26 Number of spheres that are near neither polar nor nonpolar receptor atoms: 8 Final number of spheres that are from crystallographic ligand: 20