usefragsph not on
There are 25 ligand heavy atoms
Ligand center of coords (x y z): 28.39476 -5.02048 2.9282
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1376
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 662
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 662
Number of spheres polar: 137, nonpolar: 339, out of current total: 662
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 19.17100 38.34193 -14.92407 3.79163 -7.04750 12.63041
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 374
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 323
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 316
Spheres center of coords (x y z): 31.7455370253164 -7.45172367088608 2.24178737341772
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 6.22797682286495
Final number of output spheres is: 60
Number of polar spheres: 20
Number of nonpolar spheres: 31
Number of spheres that are near neither polar nor nonpolar receptor atoms: 9
Final number of spheres that are from crystallographic ligand: 25