usefragsph not on
There are 40 ligand heavy atoms
Ligand center of coords (x y z): 17.181625 33.93175 38.4276
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1832
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 674
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 674
Number of spheres polar: 181, nonpolar: 334, out of current total: 674
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 7.18198 27.12473 23.94253 43.48764 28.45100 48.34755
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 388
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 337
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 297
Spheres center of coords (x y z): 19.4203739393939 32.7989544781145 36.3172434006734
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 4.55617262897172
Final number of output spheres is: 60
Number of polar spheres: 10
Number of nonpolar spheres: 41
Number of spheres that are near neither polar nor nonpolar receptor atoms: 9
Final number of spheres that are from crystallographic ligand: 40