usefragsph not on There are 33 ligand heavy atoms Ligand center of coords (x y z): -51.422696969697 -0.0441515151515152 -19.3670606060606 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1814 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 964 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 963 Number of spheres polar: 256, nonpolar: 471, out of current total: 963 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -61.41019 -41.43083 -10.04023 9.94957 -29.35647 -8.97500 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 530 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 452 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 398 Spheres center of coords (x y z): -49.7920076633166 -1.73201575376884 -18.8741747236181 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.4547657884829 Final number of output spheres is: 60 Number of polar spheres: 19 Number of nonpolar spheres: 35 Number of spheres that are near neither polar nor nonpolar receptor atoms: 6 Final number of spheres that are from crystallographic ligand: 33