usefragsph not on There are 35 ligand heavy atoms Ligand center of coords (x y z): -49.6893428571428 -1.03802857142857 -20.4142285714286 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1445 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 810 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 807 Number of spheres polar: 156, nonpolar: 315, out of current total: 807 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -59.68913 -39.79261 -10.95850 8.85890 -30.38646 -10.41579 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 308 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 267 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 262 Spheres center of coords (x y z): -49.0852594274809 -2.09868427480916 -19.7803310687023 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.93263403252047 Final number of output spheres is: 45 Number of polar spheres: 8 Number of nonpolar spheres: 26 Number of spheres that are near neither polar nor nonpolar receptor atoms: 11 Final number of spheres that are from crystallographic ligand: 35