usefragsph not on There are 31 ligand heavy atoms Ligand center of coords (x y z): -49.453 -2.291 -22.7076129032258 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1498 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 821 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 816 Number of spheres polar: 221, nonpolar: 276, out of current total: 816 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -59.40673 -39.60879 -12.27905 7.65105 -32.67566 -12.84681 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 301 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 251 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 241 Spheres center of coords (x y z): -48.0351082572614 -3.52944298755187 -22.8059098340249 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.33325276973614 Final number of output spheres is: 45 Number of polar spheres: 11 Number of nonpolar spheres: 17 Number of spheres that are near neither polar nor nonpolar receptor atoms: 17 Final number of spheres that are from crystallographic ligand: 31