usefragsph not on There are 32 ligand heavy atoms Ligand center of coords (x y z): 16.10471875 34.6509375 91.68271875 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1511 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 612 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 612 Number of spheres polar: 160, nonpolar: 322, out of current total: 612 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 6.11237 26.09055 24.65159 44.36893 81.77682 101.51033 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 343 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 299 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 240 Spheres center of coords (x y z): 18.7630865416667 33.3884276666667 89.0117556249999 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 4.27876200438979 Final number of output spheres is: 60 Number of polar spheres: 15 Number of nonpolar spheres: 41 Number of spheres that are near neither polar nor nonpolar receptor atoms: 4 Final number of spheres that are from crystallographic ligand: 32