usefragsph not on There are 35 ligand heavy atoms Ligand center of coords (x y z): -11.8491428571429 16.8969142857143 31.8358285714286 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1425 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 725 WARNING: removing a crystallographic sphere that is distance 0.957288880119267 angstroms from closest receptor atom Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 709 Number of spheres polar: 158, nonpolar: 294, out of current total: 709 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -21.71252 -1.89746 6.94909 26.89482 22.25541 41.77997 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 439 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 385 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 359 Spheres center of coords (x y z): -13.2510599721448 16.6049038997214 32.3064519777159 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.71407814831019 Final number of output spheres is: 60 Number of polar spheres: 11 Number of nonpolar spheres: 33 Number of spheres that are near neither polar nor nonpolar receptor atoms: 16 Final number of spheres that are from crystallographic ligand: 34