DOCK version 3.5.54, compiled on 20120216 CPU, Date, and Time: node-4-20.c.bkslab.org 10-Apr-12 19:28:44 Solvation type: context-dependent ligand desolvation Internal Distance Clashes will be checked Receptor spheres: ../../sph/match2.sph Receptor cluster number(s): 1 Desolvation grid: ../../grids/solvmap_sev :dislim = 1.5000 maxnodes = 4 ratiom = 0.0000 minnodes = 3 :lbinsz = 0.4000 lovlap = 0.1000 sbinsz = 0.4000 sovlap = 0.1000 Input ligand: ../../lig/db.db.gz DelPhi grid: ../../grids/rec+sph.phi vdW parms: ../../grids/vdw.parms.amb.mindock chemgrid prefix: ../../grids/chem resolution = 0.3300000 number of points = 1807800 a maximum of 1 bad contacts will be allowed for each orientation random seed = 777 natmin = 5 natmax = 100 nsav = 50000 300000 molecules may be searched in this run hydrogens always written out zooming will not be done trilinear interpolation is always done Orientation minimization: best conformation Simplex parameters: Max energy to minimize: 0.100E+16 Max step-size for translation (A): 0.20 Max step-size for euler angles: 5.00 Min energy change for restart (kcal/mol): 1.00 Energy convergence tolerance (kcal/mol): 0.10 Max number of iterations: 200 database version: 5.2 7 colors used in ligand database file 12 colors used in receptor sphere file ligand color positive 1 merged number = 1 ligand color negative 2 merged number = 2 ligand color acceptor 3 merged number = 3 ligand color donor 4 merged number = 4 ligand color ester_o 5 merged number = 5 ligand color amide_o 6 merged number = 6 ligand color neutral 7 merged number = 7 receptor color positive 1 merged number = 1 receptor color negative 2 merged number = 2 receptor color acceptor 3 merged number = 3 receptor color donor 4 merged number = 4 receptor color ester_o 5 merged number = 5 receptor color amide_o 6 merged number = 6 receptor color neutral 7 merged number = 7 receptor color not_neutral 8 merged number = 8 receptor color positive_or_donor 9 merged number = 9 receptor color negative_or_acceptor 10 merged number = 10 receptor color neutral_or_acceptor_or_donor 11 merged number = 11 receptor color donacc 12 merged number = 12 12 colors in merged ligand-sphere color table this is a run with labeled color matching: match positive negative match positive negative_or_acceptor match positive not_neutral match negative positive match negative positive_or_donor match negative not_neutral match donor acceptor match donor donacc match donor negative_or_acceptor match donor neutral_or_acceptor_or_donor match donor not_neutral match acceptor donor match acceptor donacc match acceptor positive_or_donor match acceptor neutral_or_acceptor_or_donor match acceptor not_neutral match neutral neutral match neutral neutral_or_acceptor_or_donor match ester_o donor match ester_o donacc match ester_o positive_or_donor match ester_o not_neutral match amide_o donor match amide_o donacc match amide_o positive_or_donor match amide_o not_neutral 26 chemical matches specified grid min -1.926998 16.22200 70.18600 grid max 35.57300 55.22200 112.6860 using cluster number: 1 output file: test.eel1.gz Receptor spheres: 45 0 0 0 0 0 43 non-zero colors in receptor sphere cluster cluster 1 with 45 spheres 9001 9002 9003 9004 9005 9006 9007 9008 9009 9010 9011 9012 9013 9014 9015 9016 9017 9018 9019 9020 9021 9022 9023 9024 9025 9026 9027 9028 9029 9030 9031 9032 9033 9034 9035 9036 9037 9038 9039 9040 9041 9042 9043 9044 9045 maximum receptor sphere-sphere distance 15.68320 mol# id_num matched nscored nhvy nconfs part.fcn Time E id_num nbr elect + vdW + polsol + apolsol = Total 1 HYZ_1_2RG 7551 2753008 33 600 3114.1 9.27 E HYZ_1_2RG 2 -9.85 -26.57 19.12 -3.64 -20.94 2 HYZ_1_2RG 4103 1005816 33 5400 263.7 2.91 E HYZ_1_2RG 3 -8.13 -28.17 19.50 -3.99 -20.79 3 HYZ_1_2RG 709 184516 33 9000 148.0 0.52 E HYZ_1_2RG 3 -5.43 -13.61 11.34 -1.98 -9.68 4 HYZ_1_2RG 1250 544843 33 600 69.0 1.59 E HYZ_1_2RG 2 -4.53 -20.05 17.09 -2.33 -9.82 5 HYZ_1_2RG 7551 3148215 33 600 1841.1 9.32 E HYZ_1_2RG 2 -3.12 -28.89 14.49 -3.64 -21.16 6 HYZ_1_2RG 4103 1027904 33 6380 446.1 2.98 E HYZ_1_2RG 3 -3.75 -26.82 14.08 -3.57 -20.06 7 HYZ_1_2RG 709 169185 33 7770 26.1 0.48 E HYZ_1_2RG 3 -4.39 -21.85 20.76 -1.94 -7.44 8 HYZ_1_2RG 2377 586664 33 600 191.8 1.76 E HYZ_1_2RG 2 0.02 -17.42 6.79 -2.17 -12.78 9 HYZ_1_2RG 7586 2385563 33 600 1980.0 7.96 E HYZ_1_2RG 2 -12.47 -43.72 19.01 -5.84 -43.02 10 HYZ_1_2RG 4103 927299 33 5198 138.0 2.68 E HYZ_1_2RG 3 -6.98 -49.23 18.87 -6.22 -43.56 11 HYZ_1_2RG 615 154069 33 8073 117.3 0.46 E HYZ_1_2RG 3 -11.09 -50.62 19.20 -6.20 -48.71 12 HYZ_1_2RG 1250 528319 33 600 452.0 1.53 E HYZ_1_2RG 2 -13.29 -42.55 19.10 -5.86 -42.61 13 HYZ_1_2RG 7586 2891206 33 600 1754.3 8.42 E HYZ_1_2RG 2 -10.57 -33.79 13.29 -4.12 -35.18 14 HYZ_1_2RG 4103 1064801 33 6061 238.7 3.02 E HYZ_1_2RG 3 -13.83 -51.17 20.86 -6.48 -50.63 15 HYZ_1_2RG 615 141500 33 7258 26.0 0.41 E HYZ_1_2RG 3 -13.66 -32.30 20.29 -6.03 -31.70 16 HYZ_1_2RG 2377 572881 33 600 50.1 1.67 E HYZ_1_2RG 2 -7.94 -22.67 11.01 -2.50 -22.10 17 HYZ_1_2RG 7586 2231165 33 600 2634.0 7.40 E HYZ_1_2RG 2 -5.46 -46.96 6.18 -5.91 -52.15 18 HYZ_1_2RG 4103 783347 33 4320 100.0 2.17 E HYZ_1_2RG 3 -15.21 -46.43 6.42 -5.90 -61.12 19 HYZ_1_2RG 615 175328 33 7106 120.0 0.47 E HYZ_1_2RG 3 -14.85 -44.87 6.41 -5.65 -58.96 20 HYZ_1_2RG 3725 1397467 33 600 312.2 4.01 E HYZ_1_2RG 2 -7.68 -31.57 3.94 -3.56 -38.87 21 HYZ_1_2RG 7586 2717571 33 600 1738.8 7.85 E HYZ_1_2RG 2 -5.45 -40.24 6.04 -5.54 -45.18 22 HYZ_1_2RG 4103 1046290 33 5564 630.0 2.87 E HYZ_1_2RG 3 -14.64 -43.56 6.43 -6.08 -57.85 23 HYZ_1_2RG 615 194782 33 5976 109.9 0.51 E HYZ_1_2RG 3 -18.64 -33.50 6.63 -5.94 -51.45 24 HYZ_1_2RG 6128 1369427 33 600 537.5 4.02 E HYZ_1_2RG 2 -4.82 -30.69 3.57 -3.14 -35.08 EOF: ../../lig/db.db.gz end of file encountered total minimization steps = 1810686 for debugging, time = 87.81001 solvation corrected scores: (a) 1 HYZ_1_2RG score: -61.117 nathvy = 33 nconfs = 4320 2 HYZ_1_2RG score: -58.960 nathvy = 33 nconfs = 7106 3 HYZ_1_2RG score: -57.848 nathvy = 33 nconfs = 5564 4 HYZ_1_2RG score: -52.146 nathvy = 33 nconfs = 600 5 HYZ_1_2RG score: -51.446 nathvy = 33 nconfs = 5976 6 HYZ_1_2RG score: -50.627 nathvy = 33 nconfs = 6061 7 HYZ_1_2RG score: -48.706 nathvy = 33 nconfs = 8073 8 HYZ_1_2RG score: -45.184 nathvy = 33 nconfs = 600 9 HYZ_1_2RG score: -43.562 nathvy = 33 nconfs = 5198 10 HYZ_1_2RG score: -43.024 nathvy = 33 nconfs = 600 11 HYZ_1_2RG score: -42.606 nathvy = 33 nconfs = 600 12 HYZ_1_2RG score: -38.867 nathvy = 33 nconfs = 600 13 HYZ_1_2RG score: -35.179 nathvy = 33 nconfs = 600 14 HYZ_1_2RG score: -35.083 nathvy = 33 nconfs = 600 15 HYZ_1_2RG score: -31.702 nathvy = 33 nconfs = 7258 16 HYZ_1_2RG score: -22.097 nathvy = 33 nconfs = 600 17 HYZ_1_2RG score: -21.156 nathvy = 33 nconfs = 600 18 HYZ_1_2RG score: -20.940 nathvy = 33 nconfs = 600 19 HYZ_1_2RG score: -20.786 nathvy = 33 nconfs = 5400 20 HYZ_1_2RG score: -20.059 nathvy = 33 nconfs = 6380 21 HYZ_1_2RG score: -12.784 nathvy = 33 nconfs = 600 22 HYZ_1_2RG score: -9.817 nathvy = 33 nconfs = 600 23 HYZ_1_2RG score: -9.678 nathvy = 33 nconfs = 9000 24 HYZ_1_2RG score: -7.437 nathvy = 33 nconfs = 7770 Date and Time: 10-Apr-12 19:30:13 elapsed time (sec): 87.9300