usefragsph not on There are 34 ligand heavy atoms Ligand center of coords (x y z): 67.9720294117647 34.8362647058824 74.4227647058823 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1767 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 763 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 763 Number of spheres polar: 188, nonpolar: 473, out of current total: 763 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 57.97554 77.88050 24.91235 44.79197 65.15398 84.41776 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 249 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 207 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 166 Spheres center of coords (x y z): 69.3214168072289 35.6520598795181 77.1009918674699 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 4.70194358416091 Final number of output spheres is: 45 Number of polar spheres: 12 Number of nonpolar spheres: 32 Number of spheres that are near neither polar nor nonpolar receptor atoms: 1 Final number of spheres that are from crystallographic ligand: 34