usefragsph not on There are 27 ligand heavy atoms Ligand center of coords (x y z): -8.91007407407407 48.3765185185185 332.263738518518 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1910 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 933 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 933 Number of spheres polar: 300, nonpolar: 511, out of current total: 933 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -18.82281 1.08737 38.44745 58.32786 322.27579 342.11093 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 456 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 371 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 311 Spheres center of coords (x y z): -6.1637308681672 48.1493853054662 330.157487652733 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.25311176040797 Final number of output spheres is: 60 Number of polar spheres: 15 Number of nonpolar spheres: 40 Number of spheres that are near neither polar nor nonpolar receptor atoms: 5 Final number of spheres that are from crystallographic ligand: 27