usefragsph not on There are 32 ligand heavy atoms Ligand center of coords (x y z): -2.0465625 51.9419375 24.794875 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1525 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 733 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 729 Number of spheres polar: 134, nonpolar: 458, out of current total: 729 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -12.03751 7.77167 41.94800 61.93951 14.79809 34.74533 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 237 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 202 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 166 Spheres center of coords (x y z): -4.2035236746988 52.0584428915663 21.3766034939759 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.57963043621431 Final number of output spheres is: 45 Number of polar spheres: 12 Number of nonpolar spheres: 31 Number of spheres that are near neither polar nor nonpolar receptor atoms: 2 Final number of spheres that are from crystallographic ligand: 32