usefragsph not on There are 33 ligand heavy atoms Ligand center of coords (x y z): 31.4651818181818 -1.53445454545455 25.4825151515152 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 2107 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 847 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 847 Number of spheres polar: 220, nonpolar: 549, out of current total: 847 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 21.50535 41.46247 -11.50969 8.45598 15.48566 34.97256 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 276 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 219 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 172 Spheres center of coords (x y z): 32.5736338372093 -2.40698284883721 21.7492945348837 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.93496387671538 Final number of output spheres is: 45 Number of polar spheres: 15 Number of nonpolar spheres: 27 Number of spheres that are near neither polar nor nonpolar receptor atoms: 3 Final number of spheres that are from crystallographic ligand: 33