usefragsph not on There are 33 ligand heavy atoms Ligand center of coords (x y z): 14.1154848484848 3.64960606060606 36.4803333333333 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1834 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 749 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 749 Number of spheres polar: 231, nonpolar: 387, out of current total: 749 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 4.12261 23.97635 -6.23800 13.61300 26.50192 46.38339 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 406 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 351 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 269 Spheres center of coords (x y z): 12.6228134944238 6.59040479553903 37.9506711152417 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 4.26561143333774 Final number of output spheres is: 60 Number of polar spheres: 17 Number of nonpolar spheres: 41 Number of spheres that are near neither polar nor nonpolar receptor atoms: 2 Final number of spheres that are from crystallographic ligand: 33