usefragsph not on There are 33 ligand heavy atoms Ligand center of coords (x y z): 31.5360303030303 -1.61554545454545 25.412696969697 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 2126 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 914 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 914 Number of spheres polar: 220, nonpolar: 598, out of current total: 914 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 21.71371 41.52809 -11.60407 8.36143 15.42805 34.82109 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 281 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 232 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 195 Spheres center of coords (x y z): 33.5879672307692 -3.29138748717949 23.0266196923077 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.7851629252645 Final number of output spheres is: 45 Number of polar spheres: 16 Number of nonpolar spheres: 26 Number of spheres that are near neither polar nor nonpolar receptor atoms: 3 Final number of spheres that are from crystallographic ligand: 33