usefragsph not on There are 35 ligand heavy atoms Ligand center of coords (x y z): 31.6323714285714 -1.5754 25.389 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1831 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 770 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 769 Number of spheres polar: 161, nonpolar: 433, out of current total: 769 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 21.66037 41.51849 -11.57359 8.41970 15.39485 35.32206 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 277 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 233 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 194 Spheres center of coords (x y z): 33.998406185567 -4.25240340206186 22.3117339175258 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.49409784293514 Final number of output spheres is: 45 Number of polar spheres: 16 Number of nonpolar spheres: 25 Number of spheres that are near neither polar nor nonpolar receptor atoms: 4 Final number of spheres that are from crystallographic ligand: 35