usefragsph not on There are 21 ligand heavy atoms Ligand center of coords (x y z): -24.0507619047619 4.21033333333333 -6.25238095238095 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1003 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 345 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 345 Number of spheres polar: 126, nonpolar: 180, out of current total: 345 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -34.03529 -14.19330 -3.66102 14.20463 -16.10607 3.73595 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 203 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 161 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 108 Spheres center of coords (x y z): -24.2694011111111 4.04386814814815 -6.17966398148148 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 1.96383416594719 Final number of output spheres is: 60 Number of polar spheres: 13 Number of nonpolar spheres: 37 Number of spheres that are near neither polar nor nonpolar receptor atoms: 10 Final number of spheres that are from crystallographic ligand: 21