usefragsph not on There are 37 ligand heavy atoms Ligand center of coords (x y z): 31.7974594594595 -1.2207027027027 25.4938918918919 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 2067 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 858 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 858 Number of spheres polar: 216, nonpolar: 546, out of current total: 858 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 21.82546 41.78771 -11.09169 8.45690 15.49736 35.49215 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 264 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 222 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 204 Spheres center of coords (x y z): 34.4083708333333 -2.63320901960784 22.8724531862745 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.64235296279664 Final number of output spheres is: 45 Number of polar spheres: 14 Number of nonpolar spheres: 28 Number of spheres that are near neither polar nor nonpolar receptor atoms: 3 Final number of spheres that are from crystallographic ligand: 37