usefragsph not on
There are 19 ligand heavy atoms
Ligand center of coords (x y z): 4.06247368421053 4.10705263157895 -6.09115789473684
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1185
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 388
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 388
Number of spheres polar: 163, nonpolar: 189, out of current total: 388
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -5.86386 14.05454 -5.70977 14.04843 -16.03094 3.90012
Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 122
Number of spheres after second pass removing spheres absolutely <0.8 from each other: 99
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 54
Spheres center of coords (x y z): 4.13360611111111 3.84570907407407 -6.17109444444444
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 1.71496582633829
Final number of output spheres is: 45
Number of polar spheres: 9
Number of nonpolar spheres: 31
Number of spheres that are near neither polar nor nonpolar receptor atoms: 5
Final number of spheres that are from crystallographic ligand: 19