usefragsph not on
There are 21 ligand heavy atoms
Ligand center of coords (x y z): 4.38309523809524 3.94157142857143 -6.24704761904762
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1272
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 417
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 417
Number of spheres polar: 141, nonpolar: 232, out of current total: 417
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -5.51600 14.25603 -6.03989 13.81643 -15.91116 3.74880
Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 123
Number of spheres after second pass removing spheres absolutely <0.8 from each other: 100
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 64
Spheres center of coords (x y z): 4.850290625 3.56259859375 -6.36880328125
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 2.3628151412583
Final number of output spheres is: 45
Number of polar spheres: 10
Number of nonpolar spheres: 32
Number of spheres that are near neither polar nor nonpolar receptor atoms: 3
Final number of spheres that are from crystallographic ligand: 21