There are 20 ligand heavy atoms Ligand center of coords (x y z): 5.89865 0.32015 -5.71595 useligsph not on Starting number of spheres from sph/sph cluster 0: 1302 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (12 angstroms): 725 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 724 Number of spheres polar: 301, nonpolar: 303, out of current total: 724 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -6.09984 17.87818 -11.67545 12.06376 -17.67011 6.24652 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 303 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 193 No crystallographic spheres present, so determining sphere nearest center of ligand (x y z): 5.89865 0.32015 -5.71595 Center point: 59 xyz: 5.78251 0.02949 -5.72035 After continuity checking, number of spheres is: 50 Final number of output spheres is: 50 Number of polar spheres: 11 Number of nonpolar spheres: 27 Number of spheres that are near neither polar nor nonpolar receptor atoms: 12 Final number of spheres that are from crystallographic ligand: 0