usefragsph not on
There are 20 ligand heavy atoms
Ligand center of coords (x y z): 5.89865 0.32015 -5.71595
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1302
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 319
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 319
Number of spheres polar: 116, nonpolar: 167, out of current total: 319
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -4.09915 15.54239 -9.67370 5.50800 -15.70297 4.19345
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 174
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 153
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 102
Spheres center of coords (x y z): 5.90980921568628 0.44151 -5.49712588235294
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 2.00444005181628
Final number of output spheres is: 60
Number of polar spheres: 13
Number of nonpolar spheres: 35
Number of spheres that are near neither polar nor nonpolar receptor atoms: 12
Final number of spheres that are from crystallographic ligand: 20