usefragsph not on There are 24 ligand heavy atoms Ligand center of coords (x y z): -23.4851666666667 3.97995833333333 -7.011375 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1633 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 394 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 394 Number of spheres polar: 144, nonpolar: 210, out of current total: 394 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -33.41482 -13.48851 -5.83972 13.89842 -16.92500 2.98806 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 231 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 174 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 102 Spheres center of coords (x y z): -23.5856862745098 3.84686205882353 -6.7676205882353 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 1.93970568303406 Final number of output spheres is: 60 Number of polar spheres: 11 Number of nonpolar spheres: 43 Number of spheres that are near neither polar nor nonpolar receptor atoms: 6 Final number of spheres that are from crystallographic ligand: 24