usefragsph not on There are 21 ligand heavy atoms Ligand center of coords (x y z): 34.0201428571429 -5.58609523809524 10.5291428571429 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1443 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 649 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 649 Number of spheres polar: 204, nonpolar: 369, out of current total: 649 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 24.03748 43.97578 -15.45899 4.39218 0.53218 20.40107 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 337 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 291 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 233 Spheres center of coords (x y z): 35.7793646351932 -2.65127184549356 11.1781285407725 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.98502891911786 Final number of output spheres is: 60 Number of polar spheres: 15 Number of nonpolar spheres: 37 Number of spheres that are near neither polar nor nonpolar receptor atoms: 8 Final number of spheres that are from crystallographic ligand: 21