usefragsph not on
There are 30 ligand heavy atoms
Ligand center of coords (x y z): 17.7421666666667 35.3751666666667 52.6758333333333
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1519
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 756
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 756
Number of spheres polar: 213, nonpolar: 452, out of current total: 756
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 7.74479 27.64669 25.39237 45.35863 42.68388 62.65107
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 408
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 337
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 263
Spheres center of coords (x y z): 16.7371941444867 33.5726392015209 55.57184
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 5.13774060313634
Final number of output spheres is: 60
Number of polar spheres: 10
Number of nonpolar spheres: 46
Number of spheres that are near neither polar nor nonpolar receptor atoms: 4
Final number of spheres that are from crystallographic ligand: 30