usefragsph not on There are 29 ligand heavy atoms Ligand center of coords (x y z): 67.5783103448276 35.5818965517241 16.4378620689655 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1463 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 752 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 752 Number of spheres polar: 247, nonpolar: 365, out of current total: 752 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 57.58273 77.56102 25.59033 45.57249 6.51103 26.43307 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 273 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 216 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 142 Spheres center of coords (x y z): 66.7638440140845 31.9283059859155 15.0368236619718 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.33435778701351 Final number of output spheres is: 45 Number of polar spheres: 18 Number of nonpolar spheres: 25 Number of spheres that are near neither polar nor nonpolar receptor atoms: 2 Final number of spheres that are from crystallographic ligand: 29