usefragsph not on There are 23 ligand heavy atoms Ligand center of coords (x y z): 11.206347826087 51.1240869565217 60.5267826086957 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1585 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 590 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 589 Number of spheres polar: 174, nonpolar: 325, out of current total: 589 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 1.28686 21.18773 41.14453 61.09572 50.55809 70.50499 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 326 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 272 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 156 Spheres center of coords (x y z): 11.9660741025641 52.0906342948718 63.1255251923077 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 3.76904200705509 Final number of output spheres is: 60 Number of polar spheres: 15 Number of nonpolar spheres: 36 Number of spheres that are near neither polar nor nonpolar receptor atoms: 9 Final number of spheres that are from crystallographic ligand: 23