usefragsph not on There are 18 ligand heavy atoms Ligand center of coords (x y z): -23.3192222222222 4.50422222222222 -6.63266666666667 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1241 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 407 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 406 Number of spheres polar: 140, nonpolar: 220, out of current total: 406 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -33.27049 -13.33173 -5.44063 14.39734 -15.93506 3.34772 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 134 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 100 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 51 Spheres center of coords (x y z): -23.4092996078431 4.36317137254902 -6.3987368627451 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 1.91349268286274 Final number of output spheres is: 45 Number of polar spheres: 10 Number of nonpolar spheres: 33 Number of spheres that are near neither polar nor nonpolar receptor atoms: 2 Final number of spheres that are from crystallographic ligand: 18