usefragsph not on
There are 20 ligand heavy atoms
Ligand center of coords (x y z): -5.6925 -4.2452 20.1722
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1103
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 389
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 389
Number of spheres polar: 162, nonpolar: 205, out of current total: 389
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -15.67050 4.19426 -8.06652 5.70570 10.26951 30.16374
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 195
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 166
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 95
Spheres center of coords (x y z): -5.62611547368421 -3.98970515789474 20.3446735789474
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 2.03406731757598
Final number of output spheres is: 60
Number of polar spheres: 15
Number of nonpolar spheres: 42
Number of spheres that are near neither polar nor nonpolar receptor atoms: 3
Final number of spheres that are from crystallographic ligand: 20