usefragsph not on There are 24 ligand heavy atoms Ligand center of coords (x y z): -7.26883333333333 4.78108333333333 24.6188333333333 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1366 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 574 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 574 Number of spheres polar: 128, nonpolar: 383, out of current total: 574 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -17.01242 2.72287 -5.15913 14.68905 14.71593 34.51318 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 294 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 246 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 168 Spheres center of coords (x y z): -7.63465583333333 4.7281969047619 27.1249928571429 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 3.99157098975384 Final number of output spheres is: 60 Number of polar spheres: 14 Number of nonpolar spheres: 37 Number of spheres that are near neither polar nor nonpolar receptor atoms: 9 Final number of spheres that are from crystallographic ligand: 24