usefragsph not on There are 18 ligand heavy atoms Ligand center of coords (x y z): 14.9971666666667 4.37588888888889 34.0231666666667 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1244 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 410 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 410 Number of spheres polar: 133, nonpolar: 246, out of current total: 410 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 5.04400 24.72824 -5.54933 14.29129 24.03285 43.96189 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 196 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 160 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 81 Spheres center of coords (x y z): 14.9296991358025 4.09181962962963 34.0715329629629 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 2.01674601828756 Final number of output spheres is: 60 Number of polar spheres: 12 Number of nonpolar spheres: 43 Number of spheres that are near neither polar nor nonpolar receptor atoms: 5 Final number of spheres that are from crystallographic ligand: 18