usefragsph not on
There are 31 ligand heavy atoms
Ligand center of coords (x y z): -12.5949032258065 4.267 33.8949677419355
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1576
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 426
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 426
Number of spheres polar: 102, nonpolar: 283, out of current total: 426
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -22.54005 -2.61839 -5.73122 13.27000 23.90840 43.83987
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 244
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 209
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 142
Spheres center of coords (x y z): -12.8804586619718 4.02963732394366 34.0126871830986
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 2.09968740084231
Final number of output spheres is: 60
Number of polar spheres: 5
Number of nonpolar spheres: 48
Number of spheres that are near neither polar nor nonpolar receptor atoms: 7
Final number of spheres that are from crystallographic ligand: 31