There are 17 ligand heavy atoms Ligand center of coords (x y z): 3.21488235294118 3.56182352941176 -6.319 useligsph not on Starting number of spheres from sph/sph cluster 0: 1211 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (12 angstroms): 804 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 804 Number of spheres polar: 279, nonpolar: 402, out of current total: 804 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -8.76348 15.20468 -8.26480 15.55191 -18.22419 5.65512 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 294 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 195 No crystallographic spheres present, so determining sphere nearest center of ligand (x y z): 3.21488235294118 3.56182352941176 -6.319 Center point: 21 xyz: 3.50884 3.79299 -6.66085 After continuity checking, number of spheres is: 65 Final number of output spheres is: 65 Number of polar spheres: 12 Number of nonpolar spheres: 46 Number of spheres that are near neither polar nor nonpolar receptor atoms: 7 Final number of spheres that are from crystallographic ligand: 0