usefragsph not on
There are 17 ligand heavy atoms
Ligand center of coords (x y z): 3.21488235294118 3.56182352941176 -6.319
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1211
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 501
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 501
Number of spheres polar: 145, nonpolar: 290, out of current total: 501
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -6.60191 13.13561 -6.40520 13.49547 -16.29747 3.64692
Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 162
Number of spheres after second pass removing spheres absolutely <0.8 from each other: 131
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 68
Spheres center of coords (x y z): 4.05379294117647 3.63845147058823 -6.49971779411765
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 2.54334258879654
Final number of output spheres is: 45
Number of polar spheres: 9
Number of nonpolar spheres: 29
Number of spheres that are near neither polar nor nonpolar receptor atoms: 7
Final number of spheres that are from crystallographic ligand: 17