usefragsph not on
There are 17 ligand heavy atoms
Ligand center of coords (x y z): 3.21488235294118 3.56182352941176 -6.319
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1211
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 501
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 501
Number of spheres polar: 145, nonpolar: 290, out of current total: 501
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -6.60191 13.13561 -6.40520 13.49547 -16.29747 3.64692
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 261
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 211
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 113
Spheres center of coords (x y z): 3.96111716814159 3.6530710619469 -6.47066592920354
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 2.34373447453759
Final number of output spheres is: 60
Number of polar spheres: 7
Number of nonpolar spheres: 43
Number of spheres that are near neither polar nor nonpolar receptor atoms: 10
Final number of spheres that are from crystallographic ligand: 17