There are 24 ligand heavy atoms Ligand center of coords (x y z): 3.50141666666667 3.999875 -5.99258333333333 useligsph not on Starting number of spheres from sph/sph cluster 0: 1673 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (12 angstroms): 986 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 985 Number of spheres polar: 421, nonpolar: 474, out of current total: 985 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -8.49747 15.49855 -7.99946 15.99243 -17.97672 5.98908 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 397 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 261 No crystallographic spheres present, so determining sphere nearest center of ligand (x y z): 3.50141666666667 3.999875 -5.99258333333333 Center point: 86 xyz: 3.24702 4.26480 -5.63792 After continuity checking, number of spheres is: 86 Final number of output spheres is: 86 Number of polar spheres: 25 Number of nonpolar spheres: 55 Number of spheres that are near neither polar nor nonpolar receptor atoms: 6 Final number of spheres that are from crystallographic ligand: 0